Two novel 3-chlorobenzoate-degrading bacteria were previously isolated
from an aquifer in which no such bacteria could be enriched prior to
the introduction of the 3-chlorobenzoate-degrading strain, Pseudomonas
sp. B13. To understand the origin of 3-chlorobenzoate-degrading genes
in the two novel isolates, the 16S ribosomal RNA, clcD (dienelactone
hydrolase) and clcA (chlorocatechol oxygenase) genes from these bacter
ia were amplified and sequenced. The partial 16S rRNA gene sequences a
nd REP-PCR patterns showed that these two novel isolates were identica
l but differed from strain B13. Phylogenetic analyses revealed that th
e novel isolates were closely related to Alcaligenes eutrophus in the
beta subclass of the Proteobacteria, whereas strain B13 was related to
Pseudomonas aeruginosa and P. mendocina in the gamma subclass of the
Proteobacteria. In contrast, the clcD and clcA gene sequences were ide
ntical on strain B13 and these two isolates, indicating that the 3-chl
orobenzoate-degrading genes were transferred from strain B13 to these
isolates. What cannot be established is when this transfer occurred.