Precore/core genes from hepatitis B e antigen (HBeAg)-positive and ant
ibody to HBeAg (anti-HBe) positive individuals with active hepatitis h
ave been analyzed to search for correlations with response to interfer
on before and after treatment. Pretreatment, no precore stop codon mut
ants were detected, even at the 3% level, in HBeAg-positive responders
or nonresponders. In anti-HBe-positive patients, precore mutants did
not influence response. No significant core amino acid variability was
observed in HBeAg-positive patients, irrespective of interferon respo
nse. However, anti-HBe-positive cases had multiple core protein substi
tutions, mostly in B- and T-helper cell epitopes, but responders had f
ewer (P =.02 for responders versus nonresponders and reactivators). No
ne of four responders, three of seven reactivators, and three of three
nonresponders had mutations within the major T-helper epitope from aa
50 to aa69 (P = .03). Precore mutants appeared in eight of nine natura
l seroconverters compared with 3 of 10 interferon-induced anti-HBe ser
oconverters (P = .01). Those in whom precore wild-type remained after
treatment often tested negative in the last available sample using pol
ymerase chain reaction (PCR), whereas emergence of mutants led to ongo
ing viremia in all cases. In anti-HBe-positive cases, precore sequence
s remained stable during therapy, except for 2 cases in whom a pre cor
e mutant appeared accompanied by reactivation. In the core protein, an
ti-HBe-positive cases selected a mean of 3.5, 1.6, and 1.7 amino acid
substitutions in responders, nonresponders, and reactivators respectiv
ely (P = NS). In conclusion, core but not precore sequence before ther
apy may predict response. Appearance of precore mutants during therapy
usually predicts failure to clear virus but substitution in core does
not influence outcome.