By screening members of Finnish families displaying hereditary nonpoly
posis colorectal cancer (HNPCC) for predisposing germline mutations in
MSH2 and MLH1, we show that two mutations in MLH1 together account fo
r 63% (19/30) of kindreds meeting international diagnostic criteria. M
utation 1, originally detected as a 165-base pair deletion in MLH1 cDN
A comprising exon 16, was shown to consist of a 3.5-kilobase genomic d
eletion most likely resulting from Alu-mediated recombination. Mutatio
n 2 destroys the splice acceptor site of exon 6. A simple diagnostic t
est based on polymerase chain reaction was designed for both mutations
. Our results show that these two ancestral founding mutations account
for a majority of Finnish HNPCC kindreds and represent the first repo
rt of Alu-mediated recombination causing a prevalent, dominantly inher
ited predisposition to cancer.