T. Okuda et al., NEW ISOLATION METHODS AND POLYMERASE CHAIN-REACTION STRAIN DISCRIMINATION TECHNIQUES FOR NATURAL-PRODUCTS SCREENING PROGRAMS, Canadian journal of botany, 73, 1995, pp. 946-954
A new isolation method of fungi was established by using the Percoll d
ensity gradient centrifugation. We found that the difference in the sp
ecific gravity allowed us to separate mixtures of fungal spores of Asp
ergillus, Fusarium, Listeromyces, Penicillium, and Trichoderma. When t
his technique was applied to soil samples, a wider variety of fungi we
re isolated compared with those obtained from an ordinary serial dilut
ion method. For screening purposes, it is necessary to eliminate redun
dant strains from the strains initially isolated. For the efficient di
scrimination of strains, the random amplified polymorphic DNA (RAPD) m
ethod was applied. The establishment of a standard method for RAPD ena
bled us to minimize the deviation of R(f) values between gels to less
than 0.03. Conversion of the R(f) values to binary matrices provided a
matrix data that could be analyzed statistically. Based on the RAPD,
it was possible to select genetically distinct fungal strains within a
species.