We have investigated the Ca2+ dependency of DNA degradation into nucle
osome-sized fragments in intact chromaffin-like PC12 cells and PC12 nu
clear fractions. In intact cells we were unable to trigger DNA fragmen
tation by inducing either transient or sustained elevations of cytopla
smic Ca2+ ([Ca2+](i)) with the Ca2+ ionophore ionomycin. On the contra
ry, DNA fragmentation was induced ill intact cells by the intracellula
r Zn2+ chelator NNN'N'-tetrakis-(2-pyridylmethyl)ethylenediamine (TPEN
). To characterize further PC12 cell endonuclease activity, we then in
vestigated digestion by purified PC12 cell fractions of exogenously ad
ded plasmids. In nuclear fractions two endonuclease activities were id
entified: an acidic (pH 5.0) endonuclease activity that was fully Ca2- and Mg2+-independent; and a neutral (pH 7.6) endonuclease activity t
hat was Ca2+-independent but Mg2+-dependent. Both endonuclease activit
ies were inhibited by Zn2+ Nuclear membrane permeabilization greatly e
nhanced plasmid digestion at pH 7.6, but not at pH 5.0. This suggests
that neutral endonuclease was located in a membrane-bound compartment,
whereas acidic endonuclease was freely accessible to the substrate ev
en in the presence of an intact nuclear membrane. In intact nuclei, di
gestion of genomic DNA could not be triggered by increasing the bivale
nt cation composition of the medium. On the contrary, in hypotonic med
ium we observed a large spontaneous nucleolytic DNA degradation that w
as increased by Zn2+ chelation. However, an acidic pH shift was a pote
nt stimulus for DNA fragmentation in isotonic as well as hypotonic med
ium.