Two microsatellite sequences, one within a gamma-gliadin locus and ano
ther within a low molecular weight glutenin locus, were characterized
on a set of 16 wheat lines. The wheat lines analyzed were primarily Ca
nadian cultivars or breeding lines. A high level of variation was dete
cted, especially between the Canadian Prairie Spring and the Canadian
Western Red Spring Wheat classes. Markers based on microsatellite sequ
ence sites appear to be more informative on closely related germplasm
than either RFLP- or RAPD-based markers. The applicability of these ma
rkers across a wide spectrum of classes and cultivars provides a start
ing point for developing a point of delivery wheat class identificatio
n system.