P. Berthault et al., A SELF-INCLUDED CYCLOMALTOHEPTAOSE DERIVATIVE STUDIED BY NMR-SPECTROSCOPY AND MOLECULAR MODELING, Carbohydrate research, 276(2), 1995, pp. 267-287
The 3D structure of 6-deoxy-6-L-tyrosinylamidocyclomaltoheptaose, a se
lf-complexing beta-cyclodextrin derivative, was determined by NMR and
molecular modelling. The aminoacyl side-chain is included in the cavit
y and induces chemical-shift variations in the CD proton signals, allo
wing their complete assignment. Dipolar interactions between protons o
f the tyrosine ring and internal protons of the cyclodextrin were used
to obtain distance constraints. Then 42 structures were calculated fr
om 32 distance constraints - 21 shorter than 4 Angstrom involve the ho
st-guest interactions - using a simulated annealing procedure. Startin
g from one of the resulting structures, a 250-ps molecular dynamics si
mulation was carried out in a waterbox without constraint. The simulat
ion data are in agreement with NMR data such as nOe and ring-current e
ffects. The cyclodextrin part takes an elliptical shape, which tightly
fits the aromatic moiety. As a consequence, the respective motion of
the host and the guest moieties have the same amplitude and time scale
: the self-inclusion complex shows only little flexibility.