COMPLETE NUCLEOTIDE-SEQUENCE OF PEPPER HUASTECO VIRUS - ANALYSIS AND COMPARISON WITH BIPARTITE GEMINIVIRUSES

The complete nucleotide sequence of pepper huasteco geminivirus (PHV) isolated in Northern Mexico was determined. The PHV genome consists of two circular ssDNA molecules of 2631 bases (PHV A) and 2589 bases (PH V B). PHV has a genome organization typical of a bipartite geminivirus with four open reading frames (ORFs) (AR1, AL1, AL2 and AL3) in compo nent A and two (BR1 and BL1) in component B. An unexpected ORF was fou nd in the complementary sense strand of PHV A. This ORF, termed AL5, i s found entirely inside, but in the opposite orientation to AR1 (encod ing the coat protein). AL5 shows some homology to equivalent but small er ORFs predicted in other geminiviruses. Phylogeny trees based on pai rwise comparisons of AR1, AL2, AL3, BL1 and BR1 predicted proteins pla ced PHV among the western hemisphere geminiviruses. A phylogeny tree b ased on AL1 (replicase-encoding ORF), on the other hand, placed PHV wi th eastern hemisphere geminiviruses, i.e. African cassava mosaic virus and the Sardinia and Israel isolates of tomato yellow leaf curl virus . Possible mechanisms for the 'hybrid or transition nature' of PHV are discussed.