IN mammals, induction of male sex determination requires the Y-chromos
ome gene SRY1. SRY encodes a protein with a central 'high mobility gro
up' domain (HMG box) of about 78 amino acids1-3 . HMG boxes are found
in a wide variety of proteins that bind to DNA with high affinity but
differing degrees of sequence specificity4. The human SRY protein bind
s to linear DNA with sequence specificity5 and to cruciform DNA struct
ures without sequence specificity6. The DNA-binding activity of the SR
Y protein resides in the HMG box and mutations in this region are asso
ciated with sex reversal in XY females6-8. No function has been ascrib
ed to the portions of the SRY protein outside the HMG box. SRY belongs
to a family of genes that are related by sequence homology within the
DNA-binding domain: the genes most similar to SRY (>60%) have been na
med SOX genes (SRY box genes). None of the known SOX genes is homologo
us to SRY outside the HMG-box region. Although SRY is an important dev
elopmental regulator, its sequence is poorly conserved between species
apart from the HMG-box domain. Here we investigate the coding sequenc
e of SR Y in primates and find that evolution has been rapid in the re
gions flanking the conserved domain. The high degree of sequence diver
gence and the frequency of non-synonymous mutations suggest either tha
t the majority of the coding sequence has no functional significance o
r that directional selection has occurred.