Di. Nurminsky, 2 SUBFAMILIES OF MDG1 RETROTRANSPOSON WITH DIFFERENT EVOLUTIONARY HISTORIES IN DROSOPHILA-MELANOGASTER, Journal of molecular evolution, 37(5), 1993, pp. 496-503
Two copies of nonmobile retrotransposon localized in D. melanogaster h
eterochromatin (mdg1het) were sequenced at the 3'-end. The comparison
of 2.5-kb mdg1het sequences with the sequence of cognate euchomatic tr
ansposable copies (mdg1tr) revealed an intact mdg1 ORF2 encoding the p
ol gene in mdg1het, and two-thirds of nucleotide substitutions in this
ORF were synonymous. All the known mdg1 regulatory elements in the md
g1het LTR also are conserved, in spite of numerous deletions and nucle
otide substitutions elsewhere in this region. These data suggest that
the mdg1het subfamily lost its mobility more recently than other funct
ions were lost. The G-->A hypermutation known to occur in the reverse
transcription cycle of retroviruses was detected in one mdg1het copy.
The structure of the enchancerlike region in mdg1het suggests a reduce
d transcription level and, therefore, transposition frequency, relativ
e to mdg1tr. The number of nucleotide substitutions suggests that the
time of mdg1het mobility loss was less than 0.3-0.5 Myr ago.