D. Barlocco et al., COMPUTER-AIDED STRUCTURE AFFINITY RELATIONSHIPS IN A SET OF PIPERAZINE AND 3,8-DIAZABICYCLO[3.2.1]OCTANE DERIVATIVES BINDING TO THE MU-OPIOID RECEPTOR, Journal of computer-aided molecular design, 7(5), 1993, pp. 557-571
Molecular modeling studies were carried out on a set of piperazine and
3,8-diazabicyclo[3.2.1]octane derivatives with the aim to highlight t
he main factors modulating their affinity for the mu-opioid receptor.
Structure-affinity relationships were developed with the aid of molecu
lar mechanics and semiempirical quantum-mechanics methods. According t
o our proposed pharmacodynamic model, the binding to the mu-receptor i
s promoted by the following physico-chemical features: the presence of
hydrocarbon fragments on the nitrogen ring frame capable of interacti
ng with one of two hypothesized hydrophobic receptor pockets; a 'corre
ct' orientation of an N-propionyl side chain so as to avoid a sterical
ly hindered region of the receptor; the possibility of accepting a hyd
rogen bond from a receptor site complementary to the morphine phenol o
xygen.