The temperature structure within the northern auroral region of Jupite
r is studied by reanalyzing the Voyager 1/infrared interferometer and
radiometer spectrometer (IRIS) spectra. The total measured excess infr
ared auroral zone emission (averaged over the IRIS field of view) in t
he hydrocarbon bands between 7 and 13 mum is found to be about 208 erg
s cm-2 s-1 over an area of about 2 x 10(18) cm2 with a resulting power
output of 4 x 10(13) W. In comparison, the total energy deposition by
magnetospheric charged particles has been estimated on the basis of U
V observations to range between 1 x 10(13) and 4 x 10(13) W over a com
parable area. The large amount of radiated energy observed in the infr
ared may imply an additional heat source in the auroral regions (possi
bly Joule heating). A new set of thermal profiles of Jupiter's high-la
titude upper atmosphere has also been derived. These profiles have a l
arge temperature enhancement in the upper stratosphere and are constra
ined to reproduce the CH4 emission at 7.7 mum. The emission in the oth
er hydrocarbon bands (C2H2 and C2H6) is found to depend on the depth t
o which the temperature enhancement extends, which further constrains
the thermal profiles. This study shows that a large temperature enhanc
ement in the upper stratosphere and lower thermosphere can explain the
observed excess hydrocarbon emission bands; thus smaller variations i
n hydrocarbon abundances (between the high latitudes and the equatoria
l and middle latitudes) are required that has been assumed in previous
models.