In early studies of ARSs in A364a chromosome V, 3 strains of A364a wit
h ARS-containing plasmids which underwent recombination again after in
sertion of foreign DNA from A364a chromosome V were isolated from the
chromosome V-specific library. After extensive studies on the mechanis
m of this recombination event, it was found that a common foreign DNA
fragment (fragment A) of these 3 plasmids hybridized with A364a chromo
some V, but not with E. coli genome DNA nor with yeast transposon elem
ent Ty. This shows that fragment A originated from A364a chromosome V
but not from other chromosome (since fragment A was isolated from plas
mid out of chromosome V-specific library). Accidentally, the nucleotid
e sequences of foreign DNAs inserted in pYA34 and pYA2 were highly hom
ologous to that of CAR2 gene: 95% homologous to 5'-regulatory region,
and 73.4% to the coding region. A possible explanation for this phenom
enon was thus put forward: possible existence of CAR2 gene family in A
364 including inactive pseudogene and small fragmentary pieces of CAR2
gene. This is why these functionless pseudogenes and short fragmentar
y pieces were not detected with the method based on their function by
which CAR2 was assigned to chromosome XII.