In addition to primary circulatory disturbance, the presence of congen
ital heart disease may compromise the development of organ systems inc
luding the myocardium, the pulmonary vasculature and the central nervo
us system. Therefore, early elective repair of complex congenital hear
t defects is desirable. Today repair of complex congenital heart defec
ts in the neonate can be achieved at low early and late mortality and
morbidity with favorable long-term functional results. However, much r
emains to be learnt about the cellular and molecular effects of open h
eart surgery and hypothermia on the neonate.