Restriction site mapping of chloroplast DNA from 31 species representi
ng 26 genera of the Ranunculaceae was performed using eleven restricti
on endonucleases. The chloroplast genome varies in length from approxi
mately 152 to 160 kb. Length variants are frequent in the Ranunculacea
e and range from usually less than 300 bp to rarely 1.5 kb. The invert
ed repeat is extended into the large single copy (LSC) region by 4-4.5
kb in Anemone, Clematis, Clematopsis, Hepatica, Knowltonia, and Pulsa
tilla. Several inversions are present in the LSC-region of the cpDNA i
n all these genera and in Adonis. The frequency of restriction site mu
tations varies within the chloroplast genome in the Ranunculaceae betw
een 4 and 32 mutations per kilobase, and is lowest in the inverted rep
eat and the regions containing the ATPase-genes and the genes psaA, ps
aB, psbA, rpoB, and rbcL. A total of 547 phylogenetically informative
restriction sites was utilized in cladistic analyses of the family usi
ng Wagner, Dollo, and weighted parsimony. These three parsimony analys
es result in different tree topologies. Four, six, and one equally mos
t parsimonious trees were obtained with Wagner, Dollo, and weighted pa
rsimony, respectively. The amount of support for the monophyletic grou
ps was evaluated using bootstrapping and decay analysis. All three par
simony methods suggest that Hydrastis is the sister group to the remai
nder of the Ranunculaceae, and that the Anemone-Clematis group, which
shares several derived cpDNA rearrangements, is monophyletic. Only a f
ew of the traditional groups in the Ranunculaceae are supported by cpD
NA restriction side data. Only Dollo parsimony provides support for th
e hypothesis that Thalictroideae and Ranunculoideae are monophyletic.