In the current study, we developed an improved method for ISH at the e
lectron microscopic level, in which we employed pre-embedding hybridiz
ation using a BrdU labeled probe followed by post-embedding immunoglob
uline gold colloid staining (IGS). Because metabolic labeling of BrdU
provides an almost evenly labeled DNA probe with high labeling index,
pre-embeddingly hybridized BrdU-labeled probe preserves its detectable
antigenicity even after the preparation of ultrathin sections. We dem
onstrated precise cell identification, early stage of gene expression
and alternative splicing patterns using this technique.