COMPLEXES OF THE TRIOLIDE FROM (R)-3-HYDROXYBUTANOIC ACID WITH SODIUM, POTASSIUM, AND BARIUM SALTS - CRYSTAL-STRUCTURES, ESTER CHELATES ANDESTER CROWNS, CRYSTAL PACKING, BONDING, AND ELECTRON-LOCALIZATION FUNCTIONS
D. Seebach et al., COMPLEXES OF THE TRIOLIDE FROM (R)-3-HYDROXYBUTANOIC ACID WITH SODIUM, POTASSIUM, AND BARIUM SALTS - CRYSTAL-STRUCTURES, ESTER CHELATES ANDESTER CROWNS, CRYSTAL PACKING, BONDING, AND ELECTRON-LOCALIZATION FUNCTIONS, Helvetica Chimica Acta, 76(7), 1993, pp. 2581-2601
The triolide of(R)-3-hydroxybutanoic acid 7,11-trimethyl-2,6,10-trioxa
dodecane-1,5,9-trione; 1), readily available from the corresponding bi
opolymer P(3-HB) in one step, forms crystalline complexes with alkali
and alkaline earth salts. The X-ray crystal structures of three such c
omplexes, (3 NaSCN) . 4 1 (2), (2 KSCN) . 2 1 . H2O (3), and (2 Ba(SCN
)2) . 2 1.2 H2O . THF (4), have been determined and are compared. The
triolide is found in these structures i) as a free molecule, making no
contacts with a cation (clathrate-type inclusion), ii) as a monodenta
te ligand coordinated to a single ion with one carbonyl O-atom only, i
ii) as a chelator, forming an eight-membered ring, with two carbonyl O
-atoms attached to the same ion, iv) as a linker, using two carbonyl O
-atoms to bind to the two metals of an ion-X-ion unit (ten-membered ri
ng), and v), in a crown-ester complex, in which an ion is sitting on t
he three unidirectional C=O groups of a triolide molecule (Figs. 1-3).
The crystal packing is such that there are columns along certain axes
in the centers of which the cations are surrounded by counterions and
triolide molecules, with the non-polar parts of 1 on the outside (Fig
. 4). In the complexes 2-4, the triolide assumes conformations which a
re slightly distorted, with the carbonyl 0-atoms moved closer together
, as compared to the 'free' triolide 1 (Fig.5). These observed feature
s are compatible with the view that oligo (3-HB) may be involved in th
e formation of Ca polyphosphate ion channels through cell membranes. A
comparison is also made between the triolide structure in 1-4 and in
enterobactin, a super Fe chelator (Fig. 5). To better understand the b
inding between the Na ion and the triolide carbonyl O-atoms in the cro
wn-ester complex, we have applied electron-localization function (ELF)
calculations with the data set of structure 2, and we have produced E
LF representations of ethane, ethene, and methyl acetate (Figs. 6-9).
It turns out that this theoretical method leads to electron-localizati
on patterns which are in astounding agreement with qualitative bonding
models of organic chemists, such as the 'double bond character of the
CO-OR single bond' or the 'hyperconjugative n-->sigma interactions b
etween lone pairs on the O-atoms and neighbouring sigma-bonds' in este
r groups (Fig.8). The noncovalent, dipole/pole-type character of bondi
ng between Na+ and the triolide carbonyl O-atoms in the crown-ester co
mplex (the Na-O=C plane is roughly perpendicular to the O-C=O plane) i
s confirmed by the ELF calculation; other bonding features such as the
C=N bond in the NaSCN complex 2 are also included in the discussion (
Fig. 9).