A rat inner ear complementary DNA (cDNA) library containing 1.9 X 10(6
) recombinants was constructed and evaluated. Inserts averaged 2.0 (+/
- 2.1) kilobases in length. A subset of inserts was screened for site
of expression. Two cDNA transcripts were isolated based on cochlear ex
pression restricted to the spiral ganglion. One transcript showed a hi
gh degree of homology to several long interspersed DNA elements, neuro
n-specific nuclear transcripts thought to be involved in gene regulati
on. The second transcript showed no homology to known sequences and ap
pears to encode a neuron-specific protein of about 248 amino acids. Th
e library can be used to identify proteins important for inner ear fun
ction and disease.