Utrophin and dystrophin are highly homologous proteins which are recip
rocally expressed in DMD (Duchenne muscular dystrophy) muscle. The rem
arkable similarity of these proteins suggests that they may play a sim
ilar cellular role in some circumstances; if this were the case then u
trophin may be capable of replacing dystrophin in DMD patients. In thi
s paper we show that the genomic structure of the utrophin gene is sim
ilar to the dystrophin gene, further exemplifying the relatedness of t
he two genes and their gene products. We have constructed a 1.25Mb con
tig of eight yeast artificial chromosome (YAC) clones covering the utr
ophin gene located on chromosome 6q24. Utrophin is encoded by multiple
small exons spanning approximately 900kb. The distribution of exons w
ithin the genomic DNA has similarities to that of the dystrophin gene.
In contrast to dystrophin, the utrophin gene has a long 5' untranslat
ed region composed of two exons and a cluster of unmethylated, rare-cu
tting restriction enzyme sites at the 5' end of the gene. Similarities
between the genomic structure suggest that utrophin and dystrophin ar
ose through an ancient duplication event involving a large region of g
enomic DNA.