In this study we investigated the genotypic characteristics of some lo
cally isolated strains of B. burgdorferi by three different methodolog
ies: restriction endonuclease analysis (REA), Southern blot hybridizat
ion with whole DNAs from Borrelia strains and Southern blot hybridizat
ion with rRNA 16+23S genes derived from E. coli. REA fingerprintings w
ere evaluated by cluster analysis, according to the principles of nume
rical taxonomy. The genomas of the locally isolated strains were compa
red with borreliae originating from different countries of Europe, inc
luding Sweden and with the American reference strain B31. Among the Eu
ropean strains, some already described by Baranton (Baranton et al., 1
992) as representatives of different genomic groups Borrelia sensu str
icto and Borrelia garinii were used. By the different techniques the i
solates were included in three genomic groups which could correspond t
o the three genospecies identified by Baranton, namely B. burgdorferi
sensu stricto, B. garinii and B. group VS461: in fact two strains were
included in a homogeneous group, probably corresponding to the VS461
genomic group, together with other European borreliae; one isolate was
included in a group consisting of B31 and some other European strains
already described as belonging to Borrelia burgdorferi in sensu stric
to. Finally two isolates were ascribed to a third genomic group probab
ly corresponding to the genospecies indicated as Borrelia garinii. The
se findings indicate that a small number of Borrelia strains isolated
from a very restricted area can be genetically heterogeneous.