This paper describes the characterization and taxonomic status of N16,
a chlamydial isolate from the respiratory tract of a horse. N16 conta
ins plasmid DNA, has normal elementary body morphology and its inclusi
ons do not stain with iodine. Its major outer-membrane protein (MOMP)
gene was completely sequenced and compared with the MOMP genes of Chla
mydia pneumoniae, C. psittaci, C. trachomatis and C pecorum. This anal
ysis revealed that N16 is closely related to the TWAR strain of C pneu
moniae (94.5 % and 94.4 % DNA homology with TWAR isolates IOL-207 and
AR-39 respectively). By comparison, N16 shows between 72.1 % and 73.7
% DNA homology with C. psittaci strains, 70.9 % and 71.1 % homology wi
th C. pecorum strains LW613 and 1710S and 69.2 % homology with C. trac
homatis serotype E. The MOMP gene of N16 shares 93-8 % DNA homology wi
th the MOMP gene of a chlamydial isolate KC from the conjunctiva of a
koala. Monoclonal antibodies raised to C. pneumoniae IOL-207 and shown
to be C. pneumoniae-specific confirmed that N16 was more closely rela
ted to C. pneumoniae than to C. psittaci. Thus DNA homology and monocl
onal antibody data both suggest that horse chlamydiae, as exemplified
by N16, form a new second strain of C. pneumoniae. This species is pro
bably more widespread and diverse than the current literature would su
ggest.