Channel incision is a widespread phenomenon that results in stream and
riparian habitat degradation. Fishes and physical habitat variables w
ere sampled at base flow from three incised stream channels and one re
ference stream in northwest Mississippi, USA, to quantify incision eff
ects on fish habitat and provide a basis for habitat rehabilitation pl
anning and design. Incised channels were sampled in spring and autumn;
the reference channel was sampled only in the autumn. Incised channel
habitat quality was inferior to the reference channel despite the pre
sence of structures designed to restore channel stability. Incised cha
nnels had physical habitat diversity levels similar to a nonincised re
ference channel, but contained fewer types of habitat. At base flow, i
ncised channels were dominated by shallow, sandy habitats, moderate to
high mean local Froude numbers, and had relatively little organic deb
ris in their beds. In contrast, the reference stream had greater mean
water depth, contained more woody debris, and provided more deep pool
habitat. Fish assemblages in incised channels were composed of smaller
fishes representing fewer species relative to the reference site. Fis
h species richness was directly proportional to the mean local Froude
number, an indicator of the availability of pool habitat.