Rhodopsins are intrinsic membrane retinal-containing proteins composed
of 7 hydrophobic alpha-helical transmembrane columns and hydrophilic
sequences of various length connecting the helices and localized at N-
and C-ends of the polypeptide. The chromophore (retinal) forms a Schi
ff base with a lysine residue in the middle part of the last alpha-hel
ix. Absorption of a photon results in isomerization of retinal which g
ives rise to a conformational change in the protein moiety. Rhodopsins
can be involved in two entirely different types of activities, i.e. i
on pumping and photosensing. Recent observations concerning the pumpin
g and sensory mechanisms allowed both these events to be explained in
terms of one and the same unitary concept, which postulates the format
ion of a hydrophilic cleft in the hydrophobic part of the protein mole
cule as a crucial step in energy conservation and photosensing.