Clinical specimens containing a suspected pathogen often have too litt
le of the pathogen's DNA to be detected directly. It is generally nece
ssary to first amplify die DNA and then to detect the amplification pr
oducts. An amplification technique called the ligase chain reaction (L
CR) is described, which in conjunction with an automated, non-radioact
ive readout format allows less than 10 molecules of target DNA to be d
etected. A prototype HIV assay and two prototype Chlamydia assays have
sensitivities and specificities equivalent to PCR.