Glacial refugia and postglacial migration are major factors responsibl
e for the present patterns of genetic variation we see in natural popu
lations. Traditionally postglacial history has been inferred from foss
il data, but new molecular techniques permit historical information to
be gleaned from present populations. The chloroplast tRNA(Leu1) intro
n contains regions which have been highly conserved over a billion yea
rs of chloroplast evolution. Surprisingly, in one of these regions whi
ch has remained invariant for all photosynthetic organisms so far stud
ied, we have found intraspecific site polymorphism. This polymorphism
occurs in two European oaks, Quercus robur and Q. petraea, indicating
hybridisation and introgression between them. Two distinct chloroplast
types occur and are distributed geographically as eastern and western
forms suggesting that these oaks are each derived from at least two s
eparate glacial refugia.