Mj. Boehm et al., EFFECT OF ORGANIC-MATTER DECOMPOSITION LEVEL ON BACTERIAL SPECIES-DIVERSITY AND COMPOSITION IN RELATIONSHIP TO PYTHIUM DAMPING-OFF SEVERITY, Applied and environmental microbiology, 59(12), 1993, pp. 4171-4179
Rhizosphere bacteria were isolated from root tip segments of cucumber
seedlings grown in a suppressive, slightly decomposed light-colored pe
at mix, a conducive, more decomposed dark-colored peat mix, and a supp
ressive dark peat mix amended with composted hardwood bark. The bacter
ia were identified by a gas chromatographic fatty acid methyl ester an
alysis. The total number of taxa recovered from a single root tip segm
ent ranged from 9 to 18. No single taxon predominated on all root tip
segments harvested from any of the mixes. The highest relative populat
ion density reached by a given taxon on any root tip segment was 45%.
Hill's first and second diversity numbers, the modified Hill's ratio,
and Hurlbert's rarefaction method, which were used as measures of spec
ies diversity, indicated that the organic matter decomposition level o
f the potting mixes did not affect bacterial species diversity. Bray-C
urtis polar ordination and Dice resemblance functions, however, indica
ted that the organic matter decomposition level of a mix significantly
influenced the composition of bacterial species in the rhizosphere. P
seudomonas spp. and other taxa capable of inducing suppression of pyth
ium damping-off predominated in the suppressive mixes. These organisms
were absent from the conducive mix, in which Arthrobacter and Bacillu
s spp. predominated. Although effective bacterial biocontrol agents we
re isolated from both the suppressive mixes and the conducive mix, the
majority were isolated from the less decomposed suppressive mixes. Fi
nally, the efficacy of strains was significantly greater in the slight
ly decomposed light peat mix than in the decomposed dark peat mix. Nat
ural disease suppression within these mixes was associated with the or
ganic matter decomposition level and the bacterial species composition
s of the mixes.