A subset of sporadic colorectal tumors and most tumors developing in h
ereditary nonpolyposis colorectal cancer patients display frequent alt
erations in microsatellite sequences. Such tumors have been thought to
manifest replication errors (RER+), but the basis for the alterations
has remained conjectural. We demonstrate that the mutation rate of (C
A)n repeats in RER+ tumor cells is at least 100-fold that in RER- tumo
r cells and show by in vitro assay that increased mutability of RER+ c
ells is associated with a profound defect in strand-specific mismatch
repair. This deficiency was observed with microsatellite heteroduplexe
s as well as with heteroduplexes containing single base-base mismatche
s and affected an early step in the repair pathway. Thus, a true mutat
or phenotype exists in a subset of tumor cells, the responsible defect
is likely to cause transitions and transversions in addition to micro
satellite alterations, and a biochemical basis for this phenotype has
been identified.