The mitochondrial inner membrane protease is required for the maturati
on of mitochondrial proteins that are delivered to the intermembrane s
pace. In the yeast Saccharomyces cerevisiae, this protease is now show
n to be a complex that contains two catalytic subunits, Imp2p and the
previously identified Imp1p. Primary structure similarity indicates th
at Imp1p and Imp2p are related to each other and to the family of euba
cterial and eukaryotic signal peptidases. Imp1p and Imp2p have separat
e, nonoverlapping substrate specificities. In addition to its catalyzi
ng the cleavage of intermembrane space sorting signals, Imp2p is requi
red for the stable and functional expression of Imp1p. Thus, inner mem
brane protease, and by analogy eukaryotic multisubunit signal peptidas
es, may have acquired multiple catalytic subunits by gene duplication
to broaden their range of substrate specificity.