Yeast RNA polymerase II initiation factor b, homolog of human TFIIH, i
s a protein kinase capable of phosphorylating the C-terminal repeat do
main of the polymerase; it possesses a DNA-dependent ATPase activity a
s well. The 85 kd and 50 kd subunits of factor b are now identified as
RAD3 and SSL1 proteins, respectively; both are known to be involved i
n DNA repair. Factor b interacts specifically with another DNA repair
protein, SSL2. The ATPase activity of factor b may be due entirely to
that associated with a helicase function of RAD3. Factor b transcripti
onal activity was unaffected, however, by amino acid substitution at a
conserved residue in the RAD3 nucleotide-binding domain, suggesting t
hat the ATPase/helicase function is not required for transcription. Th
ese results identify factor b as a core repairosome, which may be resp
onsible for the preferential repair of actively transcribed genes in e
ukaryotes.