Apo(a) is a low density lipoprotein homologous to plasminogen and has
been shown to be involved in coronary atheroschlerosis. In the present
paper we will try to analyze the interesting evolutionary pattern of
Apo(a). The plasminogen gene contains 5 cysteine-rich sequences, calle
d kringles, followed by a protease domain. Apo(a), probably arisen by
duplication of an ancestral plasminogen gene, contains many tandemly r
epeated copies of a sequence domain similar to the fourth kringle of p
lasminogen, 37 in human and at least 10 in the partially sequenced gen
e of rhesus, and the protease domain. We have found that the upstream
kringles of apo(a) undergo Molecular Drive-like processes that produce
high intraspecies similarity, whereas the downstream kringles evolve
in a molecular clock-like manner and show an high interspecies sequenc
e similarity. The latter regions are obviously suitable for dating the
duplication event by which Apo(a) arose from plasminogen, but only if
they evolve at the same rate in the two genes. Thus, we propose a ''M
olecular Clock Test'' for assessing whether the comparison of two para
logous genes (or gene regions) can give reliable information on the da
ting of their origin by duplication. Applying this test to the kringle
-4 domain of apo(a) and plasminogen gene, we demonstrate that the sepa
ration between the two genes by duplication dates back at about 90 Mya
immediately before the radiation of mammals.