Advances in the basic science technologies (monoclonal antibodies, pol
ymerase chain reaction, and molecular genetic techniques) have lead to
more sensitive and specific detection systems for gastrointestinal pa
thogens. In the past year, two different monoclonal-based, enzyme-link
ed immunosorbent assays have been described that specifically detect p
athogenic Entamoeba histolytica in stool. A number of different pretre
atment methods have been employed to improve polymerase chain reaction
detection of pathogens in stool. Two studies have used immunomagnetic
beads (ie, monoclonal antibody-coated) to selectively isolate salmone
llae and shigellae followed by detection using polymerase chain reacti
on-based tests. Spin column chromatography isolation of Norwalk virus
allowed for rapid detection of this virus by reverse transcriptase-pol
ymerase chain reaction. A Quiagen procedure improved detection of the
toxin A gene target for direct detection of Clostridium difficile by p
olymerase chain reaction methods. Results of recent evaluations of new
commercially available products for detection of Cryptosporidium spp
are evaluated. This report emphasizes tests with improved sensitivity,
specificity, and utility in the clinical microbiology laboratory.