Human T-cell clones with specificity to the HIV-1 nef protein were gen
erated by the in vitro stimulation of peripheral blood mononuclear cel
ls (PBMCs) from HIV-1-seronegative donors with purified nef from the H
IV-SF2 isolate produced in genetically engineered yeast. Here the char
acterization is described of a total of seven discrete clones derived
from five different donors. Each clone was CD3+CD4+CD8- as determined
by FACS analysis. The epitopes recognized by these clones were identif
ied using synthetic overlapping peptides spanning the entire length of
nef. Six discrete helper T-cell epitopes located in five distinct reg
ions of nef were identified by this approach. Three of these epitopes
are more than 80% conserved among all HIV-1 nef proteins for which seq
uence data are available. The remaining epitopes are in regions of nef
that vary among isolates. Many of the epitopes recognized by our clon
es overlap T-cell epitopes identified by others examining T-cell respo
nses to nef in HIV-1-infected patients and immunized animals. Using pa
rtially class II-matched EBV-transformed B-cell lines, we were able to
identify five different HLA class II alleles which encode restricting
elements for the in vitro nef-specific proliferative response of thes
e clones (DR1, DRw15(2), DRw6, DQw7, DP5).