Mv. Paranandi et al., DEAMIDATION AND ISOASPARTATE FORMATION DURING IN-VITRO AGING OF RECOMBINANT TISSUE-PLASMINOGEN ACTIVATOR, The Journal of biological chemistry, 269(1), 1994, pp. 243-253
When incubated at pH 7.3, 37-degrees-C, human recombinant tissue plasm
inogen activator accumulated 0.77 mol of isoaspartate per mol of plasm
inogen activator over a 14-day period. Isoaspartate was detected by en
zymatic transfer of H-3-labeled methyl groups from S-adenosyl-L-methio
nine in a reaction catalyzed by protein L-isoaspartyl methyltransferas
e. Analysis of tryptic peptides derived from aged plasminogen activato
r revealed that the two major sites of isoaspartate accumulation resul
ted from deamidation of Asn58 in the sequence -FNGG- and Asn77 in the
sequence -GNSD-. Significant levels of isoaspartate also accumulated v
ia deamidation of Asn37 in the sequence -CNSG-. All three sites occur
in sequences predicted from studies with synthetic peptide to be unsta
ble. All three sites appear to be on the surface of the protein, and a
ll three occur in regions of the protein predicted to have higher than
average chain mobility. These findings add support to the idea that s
equence and flexibility play major roles in determining susceptibility
to deamidation and peptide bond isomerization at Asn and Asp sites un
der mild conditions. These studies also illustrate the utility of enzy
matic methylation for characterizing sites of deamidation in a large p
rotein that contains numerous disulfide bonds and several sites of gly
cosylation.