Genetic epidemiological studies are useful for the knowledge of the as
sociation of markers and genes involved in diseases. In the present wo
rk, we studied the frequency of four adenomatous polyposis coli intrag
enic RFLP markers often used in risk evaluation in a population of 10
familial adenomatous polyposis patients from 10 unrelated Portuguese f
amilial adenomatous polyposis families not sharing the same mutation,
and in a population of 55 unrelated healthy Portuguese volunteers. We
compared the frequency obtained to normal and affected populations and
to results already reported in other populations. We observed allelic
frequencies for the Portuguese population that agree with the publish
ed ones. The intragenic polymorphisms show strong gametic disequilibri
um suggesting little recombination between them. We observed haplotype
frequencies significantly different in patients and controls. The gam
etic disequilibrium may be due to a common founder for a proportion of
apparently unrelated probands.