We summarize rates of metabolism and major sources and sinks of organi
c carbon in the 148-km long, tidally influenced, freshwater Hudson Riv
er. The river is strongly heterotrophic, with respiration exceeding gr
oss primary production (GPP). The P:R ratio averages 0.57 (defined as
the ratio of GPP to total ecosystem respiration) if only the aquatic p
ortion of the ecosystem is considered and 0.70 if the emergent marshes
are also included. Gross primary production (GPP) by phytoplankton av
erages approximately 300 g C cm(-2) yr(-1) and is an order of magnitud
e greater than that by submersed macrophytes. However, the river is de
ep, well mixed, and turbid, and phytoplankton spend a majority of thei
r time in the dark. As a result, respiration by living phytoplankton i
s extremely high and net primary production (NPP) by phytoplankton is
estimated to be only some 6% of GPP. NPP by phytoplankton and submerse
d macrophytes are roughly equal (approximately 20 g C m(-2) yr(-1) eac
h) when averaged over the river. Emergent marshes are quite productive
, but probably less than 16 g C m(-2) yr(-1) enters the aquatic portio
n of the ecosystem from these marshes. Heterotrophic respiration and s
econdary production in the river are driven primarily by allochthonous
inputs of organic matter from terrestrial sources. Rates of metabolis
m vary along the river, with depth being a critical controlling factor
The P:R ratio for the aquatic portion of the ecosystem varies from 1
in the mid-river to 0.2 in the deeper waters. NPP is actually negative
in the downstream waters where average depths are greater since phyto
plankton respiration exceeds GPP there; the positive rates of NPP occu
rring upriver support a downstream advection of phytoplankton to the d
eeper waters were this C is largely respired away by the algae themsel
ves. This autotrophic respiration contributes significantly to oxygen
depletion in the deeper waters of the Hudson. The tidally influenced f
reshwater Hudson largely Bts the patterns predicted by the river conti
nuum model for larger rivers, However, we suggest that the continuum m
odel needs to more clearly distinguish between GPP and NPP and should
include the importance of autotrophic respiration by phytoplankton tha
t are advected along a river. The organic carbon budget for the tidall
y influenced freshwater Hudson is balanced to within a few percent. Re
spiration (54%) and downstream advection into the saline estuary (41%)
are the major losses of organic carbon from the ecosystem. Allochthon
ous inputs from nonpoint sources on land (61%) and GPP by phytoplankto
n (28%) are the major sources to the system. Agricultural erosion is t
he major source of allochthonous inputs, Since agricultural land use i
ncreased dramatically in the last century, and has fallen in this cent
ury, the carbon cycle of the tidally influenced freshwater Hudson Rive
r has probably changed markedly over time. Before human disturbance, t
he Hudson was probably a less heterotrophic system and may even have b
een autotrophic, with gross primary production exceeding ecosystem res
piration.