A procedure to stain oyster larvae Crassostrea virginica with the fluo
rescent, lipid-specific dye Nile Red was developed. Experiments were p
erformed to select for optimal carrier solvent, staining time, stain c
oncentration, fixation regime and time of observation under the fluore
scence microscope. The technique allows relative quantification of lip
ids in individual larvae. The optimal staining technique was: Nile Red
dissolved in acetone applied on live larvae (unfixed and starved for
6 h prior to staining), at a concentration of 1.25 mug/ml, staining fo
r 1.5 h, and fluorescence measurements within 4 h after staining. Up t
o 1000 larvae can be analysed per day.