Illegitimate recombination, which is one of the major causes of genome
rearrangements, can occur in a number of ways. These might involve en
zymes which cut and join DNA or enzymes which replicate DNA, as illust
rated by two examples: (i) formation of deletions at the replication o
rigin (or i) of an Escherichia coli bacteriophage, M13; and (ii) excis
ion of E. coli transposon TnlO. It is proposed that a common theme to
various ways by which illegitimate recombination can occur might be th
e capacity to create ends in the DNA molecule and to make the ends mee
t.