A zinc endoprotease produced by Streptomyces caespitosus (ScNP) specif
ically hydrolyzes the peptide bond at the imino side of aromatic resid
ues and is the smallest protease found to date. Although ScNP carries
the zinc-binding sequence HEXXH, its primary structure of 132 amino ac
id residues differs from those of other known zinc metalloendoprotease
s, X-ray structural analysis of ScNP at 1.6 Angstrom resolution reveal
ed that despite a lack of sequence homology, the common topological fe
ature of main-chain folding and a beta-turn containing methionine, whi
ch is a feature of the zinc metalloendoprotease superfamily of metzinc
ins, is conserved in ScNP, The zinc atom of ScNP is tetrahedrally liga
ted by the two histidines in the HEXXH sequence, an aspartate residue
and a water molecule, Thus, ScNP represents a novel subfamily of metzi
ncins with a HEXXHXXGXXD zinc-binding sequence. A plausible substrate
recognition pocket to which aromatic residues bind is located near the
catalytic zinc ion.