Although unisexual ostracods are common, their evolutionary history is
now known only from inferences gained through examination of the foss
il record. Here we use mtDNA, allozyme and genome size analyses to inv
estigate the origins of unisexuality, polyploidy and clonal diversity
in the freshwater ostracod Cyprinotus incongruens. Our genetic evidenc
e suggests that transitions to polyploidy have been common in this tax
on and may sometimes involve internal genome-fusion events, in contras
t to the usual origin of animal polyploids through interspecific hybri
dization. Both the extent and congruent patterns of allozyme and mtDNA
divergence amongst clones of C. incongruens are consistent with its p
ersistence as an asexual taxon for approximately 5 million years. Howe
ver, the detected patterns of genetic variation might also reflect the
origins of this ostracod through a series of independent transitions
to asexuality by several closely related ancestral taxa. The results m
ake it clear that efforts to demonstrate the antiquity of asexual taxa
, solely from surveys of the extent of genetic divergence among their
component lineages, will ordinarily be ambiguous, requiring confirmati
on through investigations which search the genome for the genetic cons
equences of long abandoned recombination.