We have determined the haplotypes of the factor IX gene for 95 Indians
from 5 Brazilian Amazon tribes: Wayampi, Wayana-Apalai, Kayapo, Arara
, and Yanomami. Eight polymorphisms linked to the factor IX gene were
investigated: MseI (at 5', nt - 698), BamHI (at 5', nt - 561), DdeI (i
ntron 1), BamHI (intron 2), XmnI (intron 3), TaqI (intron 4), MspI (in
tron 4), and HhaI (at 3', similar to 8 kb). The results of the haploty
pe distribution and the allele frequencies for each of the factor IX g
ene polymorphisms in Amerindians were similar to the results reported
for Asian populations but differed from results for other ethnic group
s. Only five haplotypes were identified within the entire Amerindian s
tudy population, and the haplotype distribution was significantly diff
erent among the five tribes, with one (Arara) to four (Wayampi) haplot
ypes being found per tribe. These findings indicate a significant hete
rogeneity among the Indian tribes and contrast with the homogeneous di
stribution of the P-globin gene cluster haplotypes but agree with our
recent findings on the distribution of cu-globin gene cluster haplotyp
es and the allele frequencies for six VNTRs in the same Amerindian tri
bes. Our data represent the first study of factor IX-associated polymo
rphisms in Amerindian populations and emphasizes the applicability of
these genetic markers for population and human evolution studies.