Members of the rab family of small GTPases are localized to distinct c
ellular compartments and function as specific regulators of vesicle tr
ansport between organelles. Overexpression of rab5, which is associate
d with early endosomes and the plasma membrane, increases the rate of
endocytosis [Bucci et al. (1992) Cell, 70, 715 - 728]. From sequence a
lignments and molecular modelling we identified structural elements th
at might contribute to the definition of the functional specificity of
rab5. To test the role of these elements experimentally, we transplan
ted them onto rab6, which is associated with the Golgi complex. The ch
imeric proteins were assayed for intracellular localization and stimul
ation of endocytosis. First, we found that the C-terminus of rab5 coul
d target rab6 to the plasma membrane and early endosomes but it did no
t confer rab5-like stimulation of endocytosis. Further replacement of
other regions revealed that the N-terminus, helix alpha2/loop 5 and he
lix alpha3/loop 7 were all required to functionally convert rab6 into
rab5. Reciprocal hybrids of rab5 containing these regions replaced wit
h those of rab6 were inactive, demonstrating that each region is essen
tial for rab5 function. These results indicate that distinct structura
l elements specify the localization, membrane association and regulato
ry function of rab5.