REPLICATED DATA AND DOMAIN DECOMPOSITION MOLECULAR-DYNAMICS TECHNIQUES FOR SIMULATION OF ANISOTROPIC POTENTIALS

Citation
Mr. Wilson et al., REPLICATED DATA AND DOMAIN DECOMPOSITION MOLECULAR-DYNAMICS TECHNIQUES FOR SIMULATION OF ANISOTROPIC POTENTIALS, Journal of computational chemistry, 18(4), 1997, pp. 478-488
Citations number
20
Categorie Soggetti
Chemistry
ISSN journal
01928651
Volume
18
Issue
4
Year of publication
1997
Pages
478 - 488
Database
ISI
SICI code
0192-8651(1997)18:4<478:RDADDM>2.0.ZU;2-Y
Abstract
The implementation of parallel molecular dynamics techniques is discus sed in the context of the simulation of single-site anisotropic potent ials. We describe the use of both replicated data and domain decomposi tion approaches to molecular dynamics and present results for systems of up to 65536 Gay-Berne molecules on a range of parallel computers (T ranstech i860/XP Paramid, Intel iPSC/860 Hypercube, Gray T3D). We find that excellent parallel speed-ups are possible for both techniques, w ith the domain decomposition method found to be the most efficient for the largest systems studied. (C) 1997 by John Wiley & Sons, Inc.