Electrospray ionization of carbonic anhydrase with ion dissociation yi
elds amass spectrum from which the masses of > 100 isotopic clusters a
re determined accurately, with the number of charges assigned directly
from resolved isotopic peaks. Of these clusters, 80% correspond to fr
agmentation at or near the amino acid proline. The masses of combinati
ons of two, three, and four of these clusters sum to the molecular mas
s with 0.1-Da accuracy, while further fragment ion dissociation provid
es additional sequence information. The capability of this methodology
to detect sequence variations is illustrated with an isozyme having a
single amino acid replacement.