PARALLEL COMPUTATION OF THE MATRIX OF THE CHEMICAL DISTANCES ON THE CONNECTION MACHINE

Authors
Citation
O. Ori et P. Marenzoni, PARALLEL COMPUTATION OF THE MATRIX OF THE CHEMICAL DISTANCES ON THE CONNECTION MACHINE, Molecular simulation, 11(6), 1993, pp. 365-372
Citations number
14
Categorie Soggetti
Physics, Atomic, Molecular & Chemical
Journal title
ISSN journal
08927022
Volume
11
Issue
6
Year of publication
1993
Pages
365 - 372
Database
ISI
SICI code
0892-7022(1993)11:6<365:PCOTMO>2.0.ZU;2-J
Abstract
We report here the parallel implementation of an original algorithm al lowing a fast calculation of the distance matrix D of a graph represen ting a given chemical structure (molecule, polymer, crystal, etc.). Ou r algorithm fits perfectly in the SIMD parallel architecture of the Co nnection Machines CM-200 as we shall show. After discussing the perfor mances of the parallel evaluation of D, we will end with a relevant ap plication concerning C-60 and C-70 fullerenes. The present study appli es to a generic globally connected graph without any restriction on th e local connectivity of each graph's vertex.