O. Ori et P. Marenzoni, PARALLEL COMPUTATION OF THE MATRIX OF THE CHEMICAL DISTANCES ON THE CONNECTION MACHINE, Molecular simulation, 11(6), 1993, pp. 365-372
We report here the parallel implementation of an original algorithm al
lowing a fast calculation of the distance matrix D of a graph represen
ting a given chemical structure (molecule, polymer, crystal, etc.). Ou
r algorithm fits perfectly in the SIMD parallel architecture of the Co
nnection Machines CM-200 as we shall show. After discussing the perfor
mances of the parallel evaluation of D, we will end with a relevant ap
plication concerning C-60 and C-70 fullerenes. The present study appli
es to a generic globally connected graph without any restriction on th
e local connectivity of each graph's vertex.