An apparently nonreplicative integration reaction mediated by the inse
rtion sequence IS911 has been analyzed. It is shown to involve the rig
ht-end inverted repeat (IRR) of the element and sequences in the flank
ing vector DNA. The flanking sequences appear to behave as a surrogate
IS911 end, since integration is greatly reduced when limited similari
ties with IRR are eliminated by site-directed mutagenesis. Data are pr
esented which suggest that the activity of the IRR junction results fr
om the proximity of the transposase gene and may therefore reflect pre
ferential transposase recognition of IRR in cis.