Mass mortalities, due to infectious disease or toxic algal blooms, a,e
known to have severe demographic impacts on marine mammal populations
. The genetic impacts of these events, however, have received little a
ttention. To investigate the genetic consequences of an unusual group
mortality among humpback whales, we compared the mitochondrial DNA hap
lotypes of 10 whales poisoned by mackerel contaminated with a dinoflag
ellate neurotoxin to those of 32 live whales from the same regional po
pulation. Two haplotypes that were rare in the reference sample of liv
e whales accounted for eight of the 10 poisoned whales. A randomized t
est of independence, based on 500 permutations of the data matrix, sho
wed significant differences in the frequencies of haplotypes in the tw
o samples (P <.002). This is the first demonstration that group mortal
ity events in marine mammals can have unpredictable genetic consequenc
es and points to a need to evaluate ecological disasters within the co
ntext of the genetic mosaic of natural populations.