Analysis of the shape of the cross sections of adult rat optic nerve a
xons reveals that the majority of axons do not have a true circular sh
ape. Therefore, determination of axonal size has to utilize methods of
approximation. The method presented here utilizes three calculated pa
rameters for expression of axonal size: (i) axonal diameter, as calcul
ated from its area, or (ii) axonal diameter, as calculated from its pe
rimeter, both assuming axonal shape to be a perfect circle and (iii) a
xonal shape factor, which represents the divergence of the axon from a
perfect circular shape. The use of the calculated axonal diameter, wi
th a correction for its shape factor, provides a normalized way of exp
ressing axonal size.