Mm. Flocco et Sl. Mowbray, THE 1.9 ANGSTROM X-RAY STRUCTURE OF A CLOSED UNLIGANDED FORM OF THE PERIPLASMIC GLUCOSE GALACTOSE RECEPTOR FROM SALMONELLA-TYPHIMURIUM/, The Journal of biological chemistry, 269(12), 1994, pp. 8931-8936
The three-dimensional structure of a ligand-free closed form of the gl
ucose/galactose binding protein from Salmonella typhimurium has been d
etermined at a resolution of 1,9 Angstrom The crystallographic R-facto
r for the refined structure is 17.9%. The model contains all the atoms
of the 309 residues of the protein sequence, a calcium ion, and 174 w
ater molecules. The root mean square (r.m.s.) deviations for the whole
molecule are: 0.010 A for bond lengths and 2.44 degrees for bond angl
es, indicating a good stereochemistry for the model. This structure sh
ows that the protein is able to close in the absence of ligand, adopti
ng a conformation similar to the liganded form but slightly more open.
Water molecules satisfy the hydrogen bonding ability of the hydrophil
ic side chains of the binding site in a manner which is reminiscent of
the sugars' hydrogen-bonding patterns. Since packing forces are weak,
the crystallization event is unlikely to trigger a change from an ope
n to a closed conformation. Instead, the latter must be one of the spe
cies in equilibrium in solution which is selected by packing in the cr
ystal lattice.