Protein variation was analyzed electrophoretically in six species of N
ew World tree squirrels (tribe Sciurini) representing four of five ext
ant genera. Genetic variation was either low (Microsciurus flaviventer
-percent polymorphism = 3.7, average individual heterozygosity = 0.031
) or absent (Sciurillus pusillus) in populations for which samples wer
e large enough to permit analysis. Parsimony and locus-by-locus analys
es of the protein data supported the close evolutionary affinity of th
e genera Sciurus and Microsciurus. A probability analysis of allelic d
istribution indicated that Tamiasciurus may be more closely related to
the Sciurus-Microsciurus clade than is Sciurillus. This result suppor
ts retention of red squirrels, Tamiasciurus, within the assemblage of
New World tree squirrels (Sciurini) and indicates that the high level
of morphological differentiation seen in Neotropical pygmy squirrels,
Sciurillus, is accompanied by a high level of genetic differentiation.