M. Byrnes et al., KINETIC CHARACTERISTICS OF PHOSPHOFRUCTOKINASE FROM BACILLUS-STEAROTHERMOPHILUS - MGATP NONALLOSTERICALLY INHIBITS THE ENZYME, Biochemistry, 33(11), 1994, pp. 3424-3431
The kinetic mechanism of phosphofructokinase from Bacillus sterothermo
philus has been investigated using steady-state measurements. The doub
le-reciprocal patterns observed for initial velocity, product inhibiti
on, and mixed alternate substrate studies of the reverse reaction esta
blish that the mechanism involves rapid-equilibrium random binding of
substrates and the formation of an abortive complex composed of enzyme
, MgADP, and fructose 6-phosphate (E-MgADP-Fru-6P). Initial velocity p
atterns for the forward reaction show significant nonlinearity and res
emble those seen for competitive substrate (MgATP) inhibition of an en
zyme that obeys a random mechanism. A mutant BsPFK enzyme (GV212) was
used to show that the inhibition is not due to MgATP binding in the ef
fector site. Product and dead-end inhibition studies of the forward re
action are consistent with a random mechanism, after taking into accou
nt the effects of substrate inhibition by MgATP. Initial velocity meas
urements at low MgATP concentration show that the binding of MgATP is
not a rapid-equilibrium process; i.e., the rate of catalysis is faster
than the rate of substrate binding. It is concluded that the kinetic
mechanism of the forward reaction is sequential random, with the rate
of MgATP binding slower than the catalytic rate. A model is presented
that incorporates these results and proposes that substrate binding pr
oceeds through two alternative pathways, one of which is kinetically d
isfavored. The observed MgATP substrate inhibition arises from both re
action flux through the disfavored pathway and, to some extent, aborti
ve binding of MgATP in the Fru-6P site.